Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THCA | rs61860410 | chr10:81726640 | A/G | 0.000202 | 486 | 16.22 | 15.83 | 13.5 | KM Plot |
THCA | rs61860411 | chr10:81726671 | T/C | 0.000202 | 486 | 16.22 | 15.83 | 13.5 | KM Plot |
THCA | rs61860412 | chr10:81728486 | G/A | 0.000198 | 490 | 15.93 | 15.9 | 13.5 | KM Plot |
THCA | rs61860417 | chr10:81734727 | C/T | 0.000225 | 489 | 15.9 | 17.23 | 13.5 | KM Plot |
THCA | rs61860420 | chr10:81739379 | G/A | 0.000198 | 490 | 15.93 | 15.9 | 13.5 | KM Plot |
THCA | rs61860421 | chr10:81743399 | C/T | 0.000198 | 490 | 15.93 | 15.9 | 13.5 | KM Plot |
THCA | rs61860452 | chr10:81754807 | C/T | 0.000111 | 487 | 15.97 | 16.57 | 9.77 | KM Plot |
THCA | rs61862177 | chr10:81613714 | A/G | 0 | 476 | 16.08 | 15.98 | 5.92 | KM Plot |
THCA | rs61862192 | chr10:81625851 | A/G | 9.78E-5 | 474 | 15.67 | 17.07 | 7.43 | KM Plot |
THCA | rs61862193 | chr10:81626368 | G/T | 2.78E-6 | 472 | 15.28 | 17.75 | 5.92 | KM Plot |
THCA | rs61862196 | chr10:81628022 | G/A | 5.16E-5 | 468 | 15.68 | 17.63 | 6.03 | KM Plot |
THCA | rs61862216 | chr10:81643020 | G/A | 0 | 482 | 15.9 | 17.23 | 5.92 | KM Plot |
THCA | rs61878029 | chr11:30843570 | G/T | 0.00017 | 489 | 15.33 | 17.05 | 8.35 | KM Plot |
THCA | rs618850 | chr11:63865622 | A/G | 0 | 490 | 15.93 | 15.7 | 17.77 | KM Plot |
THCA | rs61888886 | chr11:57093172 | G/A | 2.2E-11 | 488 | 16.23 | 14.9 | 20.77 | KM Plot |